ATCC® 35462™ | Erysipelothrix rhusiopathiae

Overview

Genome Browser

Related Genomes

Quality Control

Assembly Summary
Date Published	November 30, 2023
Length	1,880,883 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	6 (All Circularized)
N50	1,839,762 nt
%GC	36.32%

Annotations Summary
Number of CDS	1757
Number of Hypothetical Proteins	237
Number of tRNA	55
Number of 5s rRNA	4
Number of 16s rRNA	4
Number of 23s rRNA	4

Input Reads Summary
Oxford Nanopore Read Count	157,989
Oxford Nanopore Median Q Score	27
Illumina Read Count	6,565,934
Illumina Mean Coverage Depth	512.602×
Illumina Median Q Score	34

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Genomes

0 out of 0 selected (Select All / Deselect All).

		Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length

Displaying Genome

Sequencing Quality Control

Sequencing Quality Control Metrics
Number of trimmed reads	6,565,934
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control Metrics
Estimated genome completeness	93.58%
Estimated genome contamination	0.64%
Illumina depth of coverage	512.602×
ONT depth of coverage	515.305×

This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions