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Overview
Annotations
Related Genomes
Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 20590™ |
| Strain Alias | 3175M [FERM-P 4727, FH-2107, IFO 5748] |
| Biosafety Level | 1 |
| Type Strain | No |
| Assembly Summary | |
|---|---|
| Date Published | August 8, 2023 |
| Length | 30,114,683 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 10 (0 Circularized) |
| N50 | 3,791,856 nt |
| %GC | 50.71% |
| Annotations Summary | |
|---|---|
| Number of BUSCO Annotations | 756 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 271,590 |
| Oxford Nanopore Median Q Score | 23 |
| Illumina Read Count | 38,653,460 |
| Illumina Mean Coverage Depth | 166.831× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Protein Product | Type | OrthoDB Group |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
All Genomes
| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 38,653,460 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| BUSCO Quality Control | |
|---|---|
| Estimated genome completeness | 98.28% |
| Average depth of coverage | 166.831× |
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