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  • Curtobacterium
  • Curtobacterium pusillum

Curtobacterium pusillum (ATCC® 19096™)

Overview
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Quality Control
Assembly Summary
Date PublishedDecember 21, 2020
Length3,620,791 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs1 (All Circularized)
Assembly LevelComplete
N503,620,791 nt
%GC70.81%
Organism Summary
NameATCC® 19096™
IsolationOil brine
TagsType Strain
Biosafety Level1
Type StrainYes
Annotations Summary
Number of CDS3,415
Number of Hypothetical Proteins1,623
Number of tRNA53
Number of 5s rRNA3
Number of 16s rRNA3
Number of 23s rRNA3
Input Reads Summary
Oxford Nanopore Read Count158,921
Oxford Nanopore Median Q Score25
Illumina Read Count4,657,768
Illumina Mean Coverage Depth199.785×
Illumina Median Q Score38
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads4,657,768
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)-

Assembly Quality Control

Metrics assessing the assembly quality
3/3
3 out of 3 passed
PassedEstimated genome completeness99.49%
PassedEstimated genome contamination1.89%
PassedAverage depth of coverage199.785×
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