Organism Summary | |
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Catalog Number | ATCC® TSD-400™ |
Isolation | Wild-caught Drosophila cardini from Brackenridge Field Laboratory |
Tags | Methylation DataType Strain |
Biosafety Level | 1 |
Type Strain | Yes |
Assembly Summary | |
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Date Published | March 5, 2024 |
Length | 2,876,016 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 4 (1 Circularized) |
N50 | 2,385,876 nt |
%GC | 37.21% |
Annotations Summary | |
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Number of CDS | 2493 |
Number of Hypothetical Proteins | 243 |
Number of tRNA | 54 |
Number of 5s rRNA | 5 |
Number of 16s rRNA | 4 |
Number of 23s rRNA | 4 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 88,369 |
Oxford Nanopore Median Q Score | 25 |
Illumina Read Count | 9,388,244 |
Illumina Mean Coverage Depth | 480.934× |
Illumina Median Q Score | 34 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 9,388,244 |
Median Q score, all bases | 34 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
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Estimated genome completeness | 99.44% |
Estimated genome contamination | 0% |
Average depth of coverage | 480.934× |
This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions