Purchased a strain from ATCC? Enter in the lot number to download the genome or learn more about our supporting memberships here.
Overview
Annotations
Related Genomes
Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 32196™ |
| Strain Name | RIFY E-17 [CBS 6799, CCY 29-109-1, IFO 1664, NBRC 1664, VTT C-79090] |
| Isolation | Cabbage frass |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | December 22, 2020 |
| Length | 10,949,078 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 9 (0 Circularized) |
| N50 | 1,949,405 nt |
| %GC | 38.33% |
| Annotations Summary | |
|---|---|
| Number of BUSCO Annotations | 683 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 225,146 |
| Oxford Nanopore Median Q Score | 26 |
| Illumina Read Count | 16,648,815 |
| Illumina Mean Coverage Depth | 216.619× |
| Illumina Median Q Score | 37 |
| Contig | Start | End | Protein Product | Type | OrthoDB Group |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
Number of trimmed reads16,648,815
Median Q score, all bases37
Percent of median Q scores per cycle greater than 251%
Ambiguous content (% N bases)0%
BUSCO Quality Control
Metrics assessing the assembly quality (from BUSCO).
1 out of 2 passed, 1 requires inspection
CautionEstimated genome completeness79.16%
PassedAverage depth of coverage216.619×
This website uses cookies to ensure you get the best experience on our website. Learn moreDecline