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  • Chitinophaga
  • Chitinophaga pinensis

Chitinophaga pinensis (ATCC® 43595™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Summary
Date PublishedFebruary 26, 2020
Length9,129,004 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs1 (All Circularized)
Assembly LevelComplete
N509,129,004 nt
%GC45.23%
Organism Summary
NameATCC® 43595™
IsolationPine litter
TagsType Strain
Biosafety Level1
Type StrainYes
Annotations Summary
Number of CDS7,297
Number of Hypothetical Proteins4,474
Number of tRNA76
Number of 5s rRNA6
Number of 16s rRNA6
Number of 23s rRNA6
Input Reads Summary
Oxford Nanopore Read Count914,826
Oxford Nanopore Median Q Score20
Illumina Read Count11,089,778
Illumina Mean Coverage Depth271.513×
Illumina Median Q Score38
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads11,089,778
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)-

Assembly Quality Control

Metrics assessing the assembly quality
3/3
3 out of 3 passed
PassedEstimated genome completeness99.51%
PassedEstimated genome contamination0.74%
PassedAverage depth of coverage271.513×
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