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Overview
Genome Browser
Related Genomes
Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 43595™ |
| Strain Alias | NCIB 11800 [ACM 2034, DSM 2588, UQM 2034] |
| Isolation | Pine litter |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | February 26, 2020 |
| Length | 9,129,004 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 1 (All Circularized) |
| N50 | 9,129,004 nt |
| %GC | 45.23% |
| Annotations Summary | |
|---|---|
| Number of CDS | 7083 |
| Number of Hypothetical Proteins | 1314 |
| Number of tRNA | 73 |
| Number of 5s rRNA | 6 |
| Number of 16s rRNA | 6 |
| Number of 23s rRNA | 6 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 914,826 |
| Oxford Nanopore Median Q Score | 20 |
| Illumina Read Count | 11,089,778 |
| Illumina Mean Coverage Depth | 271.513× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 11,089,778 |
| Median Q score, all bases | 38 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 99.51% |
| Estimated genome contamination | 0.74% |
| Illumina depth of coverage | 271.513× |
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