ATCC® 43135™ | Campylobacter coli

Overview

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Quality Control

Assembly Summary
Date Published	December 13, 2024
Length	1,788,810 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	2 (1 Circularized)
N50	1,761,385 nt
%GC	31.19%

Annotations Summary
Number of CDS	1835
Number of Hypothetical Proteins	255
Number of tRNA	42
Number of 5s rRNA	2
Number of 16s rRNA	2
Number of 23s rRNA	2

Input Reads Summary
Oxford Nanopore Read Count	21,094
Oxford Nanopore Median Q Score	21
Illumina Read Count	6,557,896
Illumina Mean Coverage Depth	542.423×
Illumina Median Q Score	40

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Genomes

	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	6,557,896
Median Q score, all bases	40
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	99.72%
Estimated genome contamination	0.33%
Illumina depth of coverage	542.423×
ONT depth of coverage	116.459×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions