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- Cryptococcus neoformans species complex
- Cryptococcus neoformans
Cryptococcus neoformans (ATCC® MYA-4567™)
Overview
Annotations
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | October 29, 2021 |
| Length | 19,351,923 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 27 |
| Assembly Level | Scaffold |
| N50 | 1,126,559 nt |
| %GC | 48.57% |
| Organism Summary | |
|---|---|
| Name | ATCC® MYA-4567™ |
| Genotype | VNIV, AFLP2 |
| Biosafety Level | 2 |
| Type Strain | No |
| Annotations Summary | |
|---|---|
| Number of BUSCO Annotations | 735 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 458,854 |
| Oxford Nanopore Median Q Score | 22 |
| Illumina Read Count | 36,058,087 |
| Illumina Mean Coverage Depth | 245.494× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Protein Product | Type | OrthoDB Group |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads36,058,087
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
BUSCO Quality Control
Metrics assessing the assembly quality (from BUSCO).
2 out of 2 passed
PassedEstimated genome completeness92.08%
PassedAverage depth of coverage245.494×
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