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  • Escherichia coli

Escherichia coli (ATCC® 700927™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Summary
Date PublishedSeptember 2, 2021
Length5,510,771 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs5 (3 Circularized)
Assembly LevelChromosome
N504,263,955 nt
%GC50.43%
Organism Summary
NameATCC® 700927™
Genotype
IsolationDerived from existing strain, CDC EDL 933 (ATCC 43895)
Biosafety Level2
Type StrainNo
Antigenic Properties
Annotations Summary
Number of CDS5,261
Number of Hypothetical Proteins1,641
Number of tRNA100
Number of 5s rRNA8
Number of 16s rRNA7
Number of 23s rRNA7
Input Reads Summary
Oxford Nanopore Read Count27,096
Oxford Nanopore Median Q Score24
Illumina Read Count15,969,911
Illumina Mean Coverage Depth284.992×
Illumina Median Q Score34
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads15,969,911
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness99.97%
PassedEstimated genome contamination0.33%
PassedAverage depth of coverage284.992×
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