| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 33397™ |
| Strain Alias | NCTC 10713 [ATCC 12395, CCUG 27298, CCUG 35776, CIP 102921, DSM 20563, HAMBI 1525, LMG 14502, Lancefield F68A] |
| Isolation | Throat tissue |
| Tags | Type Strain |
| Biosafety Level | 2 |
| Type Strain | Yes |
| Antigenic Properties | Lancefield's group G |
| Assembly Summary | |
|---|---|
| Date Published | October 30, 2019 |
| Length | 1,955,308 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 1 (All Circularized) |
| N50 | 1,955,308 nt |
| %GC | 38.71% |
| Annotations Summary | |
|---|---|
| Number of CDS | 1855 |
| Number of Hypothetical Proteins | 130 |
| Number of tRNA | 59 |
| Number of 5s rRNA | 4 |
| Number of 16s rRNA | 4 |
| Number of 23s rRNA | 4 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 171,107 |
| Oxford Nanopore Median Q Score | 25 |
| Illumina Read Count | 4,398,096 |
| Illumina Mean Coverage Depth | 464.731× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 4,398,096 |
| Median Q score, all bases | 38 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 99.27% |
| Estimated genome contamination | 0.08% |
| Illumina depth of coverage | 464.731× |