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Overview
Genome Browser
Related Genomes
Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 14048™ |
| Strain Alias | [P. Baumann 111] |
| Isolation | Salt marsh mud |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | August 27, 2019 |
| Length | 5,179,791 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 2 (All Circularized) |
| N50 | 3,252,656 nt |
| %GC | 45.09% |
| Annotations Summary | |
|---|---|
| Number of CDS | 4517 |
| Number of Hypothetical Proteins | 303 |
| Number of tRNA | 126 |
| Number of 5s rRNA | 13 |
| Number of 16s rRNA | 12 |
| Number of 23s rRNA | 12 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 91,177 |
| Oxford Nanopore Median Q Score | 16 |
| Illumina Read Count | 4,251,770 |
| Illumina Mean Coverage Depth | 165.131× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 4,251,770 |
| Median Q score, all bases | 38 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 99.93% |
| Estimated genome contamination | 3.53% |
| Illumina depth of coverage | 165.131× |
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