Organism Summary | |
---|---|
Catalog Number | ATCC® 51743™ |
Strain Alias | NCIMB 8052 |
Tags | Methylation Data |
Biosafety Level | 1 |
Type Strain | No |
Assembly Summary | |
---|---|
Date Published | June 3, 2024 |
Length | 6,006,637 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 1 (All Circularized) |
N50 | 6,006,637 nt |
%GC | 29.87% |
Annotations Summary | |
---|---|
Number of CDS | 5272 |
Number of Hypothetical Proteins | 734 |
Number of tRNA | 94 |
Number of 5s rRNA | 16 |
Number of 16s rRNA | 15 |
Number of 23s rRNA | 15 |
Input Reads Summary | |
---|---|
Oxford Nanopore Read Count | 186,852 |
Oxford Nanopore Median Q Score | 21 |
Illumina Read Count | 6,942,578 |
Illumina Mean Coverage Depth | 171.416× |
Illumina Median Q Score | 34 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
---|
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
---|
Sequencing Quality Control | |
---|---|
Number of trimmed reads | 6,942,578 |
Median Q score, all bases | 34 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
---|---|
Estimated genome completeness | 99.19% |
Estimated genome contamination | 1.61% |
Average depth of coverage | 171.416× |
This bacterium was assembled, annotated, and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions