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  • Gluconobacter
  • Gluconobacter oxydans

Gluconobacter oxydans (ATCC® 621H™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Level
Date PublishedFebruary 26, 2020
Length2,950,384 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs5 (4 Circularized)
Assembly SummaryChromosome
N502,740,888 nt
%GC60.77%
Organism Summary
NameATCC® 621H™
Biosafety Level1
Type StrainNo
Annotations Summary
Number of CDS2,813
Number of Hypothetical Proteins1,330
Number of tRNA58
Number of 5s rRNA4
Number of 16s rRNA4
Number of 23s rRNA4
Input Reads Summary
Oxford Nanopore Read Count43,540
Oxford Nanopore Median Q Score23
Illumina Read Count3,978,545
Illumina Mean Coverage Depth258.905×
Illumina Median Q Score38
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads3,978,545
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness100%
PassedEstimated genome contamination0%
PassedAverage depth of coverage258.905×
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