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Overview
Genome Browser
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Quality Control
Organism Summary | |
|---|---|
| Catalog Number | ATCC® BAA-1596™ |
| Isolation | Derivative 19 was derived from the highly virulent KIM strain of Yersinia pestis (Y. pestis), which was originally isolated from a Kurdistan Iran man (KIM). |
| Tags | Methylation Data |
| Biosafety Level | 2 |
| Type Strain | No |
Assembly Summary | |
|---|---|
| Date Published | January 28, 2020 |
| Length | 4,676,153 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 3 (All Circularized) |
| N50 | 4,504,654 nt |
| %GC | 47.61% |
Annotations Summary | |
|---|---|
| Number of CDS | 4176 |
| Number of Hypothetical Proteins | 288 |
| Number of tRNA | 72 |
| Number of 5s rRNA | 8 |
| Number of 16s rRNA | 7 |
| Number of 23s rRNA | 7 |
Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 59,194 |
| Oxford Nanopore Median Q Score | 22 |
| Illumina Read Count | 6,078,081 |
| Illumina Mean Coverage Depth | 233.583× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length |
|---|
Displaying Genome
Sequencing Quality Control
Sequencing Quality Control Metrics | |
|---|---|
| Number of trimmed reads | 6,078,081 |
| Median Q score, all bases | 38 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
Assembly Quality Control
Assembly Quality Control Metrics | |
|---|---|
| Estimated genome completeness | 98.99% |
| Estimated genome contamination | 0.86% |
| Illumina depth of coverage | 233.583× |
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