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Overview
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Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 33209™ |
| Strain Alias | Lea-1-74 [IFO 15589, NCMB 2235] |
| Isolation | Yearling chinook salmon, Oncorhynchus tshawytscha, from Leaburg Hatchery |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | June 14, 2019 |
| Length | 3,155,318 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 1 (All Circularized) |
| N50 | 3,155,318 nt |
| %GC | 56.27% |
| Annotations Summary | |
|---|---|
| Number of CDS | 3230 |
| Number of Hypothetical Proteins | 459 |
| Number of tRNA | 45 |
| Number of 5s rRNA | 2 |
| Number of 16s rRNA | 2 |
| Number of 23s rRNA | 2 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 70,273 |
| Oxford Nanopore Median Q Score | 15 |
| Illumina Read Count | 4,029,883 |
| Illumina Mean Coverage Depth | 260.008× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 4,029,883 |
| Median Q score, all bases | 38 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 99.02% |
| Estimated genome contamination | 0.49% |
| Average depth of coverage | 260.008× |
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