| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 31637™ | 
| Strain Alias | FD 26347 [IFO 14176, N381-16] | 
| Isolation | Soil | 
| Tags | Type Strain | 
| Biosafety Level | 1 | 
| Type Strain | Yes | 
| Assembly Summary | |
|---|---|
| Date Published | February 21, 2025 | 
| Length | 10,933,937 nt | 
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly | 
| Number of Contigs | 2 (1 Circularized) | 
| N50 | 10,930,127 nt | 
| %GC | 71.52% | 
| Annotations Summary | |
|---|---|
| Number of CDS | 9633 | 
| Number of Hypothetical Proteins | 1989 | 
| Number of tRNA | 71 | 
| Number of 5s rRNA | 4 | 
| Number of 16s rRNA | 4 | 
| Number of 23s rRNA | 4 | 
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 146,139 | 
| Oxford Nanopore Median Q Score | 33 | 
| Illumina Read Count | 11,382,424 | 
| Illumina Mean Coverage Depth | 151.304× | 
| Illumina Median Q Score | 34 | 
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump | 
|---|
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download | 
|---|
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 11,382,424 | 
| Median Q score, all bases | 34 | 
| Percent of median Q scores per cycle greater than 25 | 1% | 
| Ambiguous content (% N bases) | 0% | 
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 97.37% | 
| Estimated genome contamination | 1.84% | 
| Illumina depth of coverage | 151.304× | 
| ONT depth of coverage | 49.787× | 
This bacterium was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions