ATCC® 31637™ | Catenuloplanes japonicus

Overview

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Quality Control

Assembly Summary
Date Published	February 21, 2025
Length	10,933,937 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	2 (1 Circularized)
N50	10,930,127 nt
%GC	71.52%

Annotations Summary
Number of CDS	9633
Number of Hypothetical Proteins	1989
Number of tRNA	71
Number of 5s rRNA	4
Number of 16s rRNA	4
Number of 23s rRNA	4

Input Reads Summary
Oxford Nanopore Read Count	146,139
Oxford Nanopore Median Q Score	33
Illumina Read Count	11,382,424
Illumina Mean Coverage Depth	151.304×
Illumina Median Q Score	34

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Genomes

	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	11,382,424
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	97.37%
Estimated genome contamination	1.84%
Illumina depth of coverage	151.304×
ONT depth of coverage	49.787×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions