Organism Summary | |
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Catalog Number | ATCC® 201839™ |
Strain Alias | F228 [CECT 20232] |
Isolation | Skin lesions on loggerhead sea turtle, Caretta caretta |
Biosafety Level | 2 |
Type Strain | No |
Assembly Summary | |
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Date Published | December 15, 2021 |
Length | 57,130,762 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 87 (0 Circularized) |
N50 | 2,583,740 nt |
%GC | 48.59% |
Annotations Summary | |
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Number of BUSCO Annotations | 753 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 797,516 |
Oxford Nanopore Median Q Score | 24 |
Illumina Read Count | 128,745,680 |
Illumina Mean Coverage Depth | 288.953× |
Illumina Median Q Score | 34 |
Contig | Start | End | Protein Product | Type | OrthoDB Group |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 128,745,680 |
Median Q score, all bases | 34 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
BUSCO Quality Control | |
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Estimated genome completeness | 99.21% |
Average depth of coverage | 288.953× |