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Overview
Annotations
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | December 15, 2021 |
| Length | 57,130,762 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 87 (0 Circularized) |
| N50 | 2,583,740 nt |
| %GC | 48.59% |
| Organism Summary | |
|---|---|
| Name | ATCC® 201839™ |
| Strain Name | F228 [CECT 20232] |
| Isolation | Skin lesions on loggerhead sea turtle, Caretta caretta |
| Tags | |
| Biosafety Level | 2 |
| Type Strain | |
| Annotations Summary | |
|---|---|
| Number of BUSCO Annotations | 753 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 797,516 |
| Oxford Nanopore Median Q Score | 24 |
| Illumina Read Count | 128,745,680 |
| Illumina Mean Coverage Depth | 288.953× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Protein Product | Type | OrthoDB Group |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads128,745,680
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 251%
PassedAmbiguous content (% N bases)0%
BUSCO Quality Control
Metrics assessing the assembly quality (from BUSCO).
2 out of 2 passed
PassedEstimated genome completeness99.21%
PassedAverage depth of coverage288.953×
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