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Overview
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | September 5, 2023 |
| Length | 193,376 nt |
| Sequencing Technology | Illumina |
| Number of Contigs | 2 (0 Circularized) |
| Assembly Level | Complete |
| N50 | 188,059 nt |
| %GC | 33.17% |
| Organism Summary | |
|---|---|
| Name | ATCC® VR-3376™ |
| Isolation | Apparently healthy wild naked-soled gerbil (Tatera kempii, current valid taxonomy Gerbilliscus kempii) caught near Kouandee in Dahomey (now Benin), West Africa on April 23, 1968. The virus was subsequently passaged in mouse brain, chicken eggs, Vero cells, and BSC40 cells. |
| Tags | |
| Biosafety Level | 2 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 0 |
| Oxford Nanopore Median Q Score | 0 |
| Illumina Read Count | 3,949,895 |
| Illumina Mean Coverage Depth | 509.712× |
| Illumina Median Q Score | 39 |
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
3 out of 3 passed
PassedMedian Q score, all bases39
PassedPercent of median Q scores per cycle greater than 251%
Ambiguous content (% N bases)0%
Notes
This virus was assembled and curated using Oatmeal v1.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions
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