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Overview
Related Genomes
Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® VR-3376™ |
| Strain Alias | V71-I-016 |
| Isolation | Apparently healthy wild naked-soled gerbil (Tatera kempii, current valid taxonomy Gerbilliscus kempii) caught near Kouandee in Dahomey (now Benin), West Africa on April 23, 1968. The virus was subsequently passaged in mouse brain, chicken eggs, Vero cells, and BSC40 cells. |
| Biosafety Level | 2 |
| Assembly Summary | |
|---|---|
| Date Published | September 5, 2023 |
| Length | 193,376 nt |
| Sequencing Technology | Illumina |
| Number of Contigs | 2 (0 Circularized) |
| Assembly Level | Complete |
| N50 | 188,059 nt |
| %GC | 33.17% |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 0 |
| Oxford Nanopore Median Q Score | 0 |
| Illumina Read Count | 3,949,895 |
| Illumina Mean Coverage Depth | 509.712× |
| Illumina Median Q Score | 39 |
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
All Genomes
| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Median Q score, all bases | 39 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
Notes
This virus was assembled and curated using Oatmeal v1.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions
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