Organism Summary | |
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Catalog Number | ATCC® 18224™ |
Strain Alias | QM 7333 [CBS 334.59, IMI 68794, LSHB BB361] |
Isolation | Bamboo rat, Rhizomys sinensis |
Tags | Type Strain |
Biosafety Level | 2 |
Type Strain | Yes |
Assembly Summary | |
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Date Published | December 22, 2020 |
Length | 29,373,959 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 12 (0 Circularized) |
N50 | 3,781,098 nt |
%GC | 46.75% |
Annotations Summary | |
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Number of BUSCO Annotations | 750 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 445,900 |
Oxford Nanopore Median Q Score | 24 |
Illumina Read Count | 35,059,932 |
Illumina Mean Coverage Depth | 166.955× |
Illumina Median Q Score | 37 |
Contig | Start | End | Protein Product | Type | OrthoDB Group |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 35,059,932 |
Median Q score, all bases | 37 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
BUSCO Quality Control | |
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Estimated genome completeness | 98.94% |
Average depth of coverage | 166.955× |