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Overview
Annotations
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | December 22, 2020 |
| Length | 29,373,959 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 12 (0 Circularized) |
| N50 | 3,781,098 nt |
| %GC | 46.75% |
| Organism Summary | |
|---|---|
| Name | ATCC® 18224™ |
| Strain Name | QM 7333 [CBS 334.59, IMI 68794, LSHB BB361] |
| Isolation | Bamboo rat, Rhizomys sinensis |
| Tags | Type Strain |
| Biosafety Level | 2 |
| Type Strain | |
| Annotations Summary | |
|---|---|
| Number of BUSCO Annotations | 750 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 445,900 |
| Oxford Nanopore Median Q Score | 24 |
| Illumina Read Count | 35,059,932 |
| Illumina Mean Coverage Depth | 166.955× |
| Illumina Median Q Score | 37 |
| Contig | Start | End | Protein Product | Type | OrthoDB Group |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads35,059,932
PassedMedian Q score, all bases37
PassedPercent of median Q scores per cycle greater than 251%
PassedAmbiguous content (% N bases)0%
BUSCO Quality Control
Metrics assessing the assembly quality (from BUSCO).
2 out of 2 passed
PassedEstimated genome completeness98.94%
PassedAverage depth of coverage166.955×
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