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  • Pediococcus
  • Pediococcus damnosus

Pediococcus damnosus (ATCC® 29358™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Summary
Date PublishedFebruary 25, 2023
Length2,518,755 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs14 (13 Circularized)
Assembly LevelChromosome
N502,191,210 nt
%GC38.39%
Organism Summary
NameATCC® 29358™
Genotype
IsolationLager beer yeast
TagsType Strain
Biosafety Level1
Type StrainYes
Antigenic Properties
Annotations Summary
Number of CDS2,347
Number of Hypothetical Proteins976
Number of tRNA62
Number of 5s rRNA4
Number of 16s rRNA4
Number of 23s rRNA4
Input Reads Summary
Oxford Nanopore Read Count134,431
Oxford Nanopore Median Q Score25
Illumina Read Count10,282,559
Illumina Mean Coverage Depth525.062×
Illumina Median Q Score34
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads10,282,559
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness99.38%
PassedEstimated genome contamination0%
PassedAverage depth of coverage525.062×
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