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Overview
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Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 6051™ |
| Strain Alias | Marburg strain [ATCC 6051-U, CCM 2216, CCRC 10255, CCUG 163B, CFBP 4228, CIP 52.65, DSM 10, IAM 12118, IFO 12210, IFO 13719, IFO 16412, IMET 10758, JCM 1465, LMG 7135, NCAIM B.01095, NCCB 32009, NCCB 53016, NCCB 70064, NCFB 1769, NCIB 3610, NCTC 3610, NRR |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | December 20, 2019 |
| Length | 4,295,427 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 2 (All Circularized) |
| N50 | 4,211,212 nt |
| %GC | 43.34% |
| Annotations Summary | |
|---|---|
| Number of CDS | 4408 |
| Number of Hypothetical Proteins | 494 |
| Number of tRNA | 88 |
| Number of 5s rRNA | 10 |
| Number of 16s rRNA | 10 |
| Number of 23s rRNA | 10 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 4,070 |
| Oxford Nanopore Median Q Score | 14 |
| Illumina Read Count | 4,860,342 |
| Illumina Mean Coverage Depth | 273.006× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 4,860,342 |
| Median Q score, all bases | 38 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 99.81% |
| Estimated genome contamination | 0.35% |
| Average depth of coverage | 273.006× |
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