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  • Methylorubrum
  • Methylorubrum extorquens

Methylorubrum extorquens (ATCC® BAA-2500™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Summary
Date PublishedMay 4, 2021
Length5,833,684 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs3 (2 Circularized)
Assembly LevelChromosome
N505,803,438 nt
%GC68.23%
Organism Summary
NameATCC® BAA-2500™
Genotype
Isolation
Biosafety Level1
Type StrainNo
Antigenic Properties
Annotations Summary
Number of CDS5,463
Number of Hypothetical Proteins3,040
Number of tRNA69
Number of 5s rRNA5
Number of 16s rRNA5
Number of 23s rRNA5
Input Reads Summary
Oxford Nanopore Read Count144,709
Oxford Nanopore Median Q Score25
Illumina Read Count22,884,171
Illumina Mean Coverage Depth533.841×
Illumina Median Q Score34
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads22,884,171
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness99.69%
PassedEstimated genome contamination0.31%
PassedAverage depth of coverage533.841×
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