Organism Summary | |
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Catalog Number | ATCC® BAA-1119™ |
Strain Alias | BB152 |
Genotype | luxM::tn5Kan |
Isolation | Sensor mutant derived from Vibrio campbellii strain BB120 (ATCC BAA-1116) |
Tags | Methylation Data |
Biosafety Level | 1 |
Type Strain | No |
Assembly Summary | |
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Date Published | October 29, 2021 |
Length | 6,064,891 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 3 (2 Circularized) |
N50 | 3,773,520 nt |
%GC | 45.44% |
Annotations Summary | |
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Number of CDS | 5464 |
Number of Hypothetical Proteins | 564 |
Number of tRNA | 129 |
Number of 5s rRNA | 13 |
Number of 16s rRNA | 12 |
Number of 23s rRNA | 12 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 17,248 |
Oxford Nanopore Median Q Score | 26 |
Illumina Read Count | 3,213,830 |
Illumina Mean Coverage Depth | 113.527× |
Illumina Median Q Score | 38 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 3,213,830 |
Median Q score, all bases | 38 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
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Estimated genome completeness | 99.59% |
Estimated genome contamination | 0.09% |
Average depth of coverage | 113.527× |