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  • Vibrio campbellii

Vibrio campbellii (ATCC® BAA-1119™)

Overview
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Related Genomes
Quality Control
Assembly Summary
Date PublishedOctober 29, 2021
Length6,066,709 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs3 (2 Circularized)
Assembly LevelChromosome
N503,773,520 nt
%GC45.44%
Organism Summary
NameATCC® BAA-1119™
GenotypeluxM::tn5Kan
IsolationSensor mutant derived from Vibrio campbellii strain BB120 (ATCC BAA-1116)
Biosafety Level1
Type StrainNo
Annotations Summary
Number of CDS0
Number of Hypothetical Proteins0
Number of tRNA0
Number of 5s rRNA0
Number of 16s rRNA0
Number of 23s rRNA0
Input Reads Summary
Oxford Nanopore Read Count17,248
Oxford Nanopore Median Q Score26
Illumina Read Count3,213,830
Illumina Mean Coverage Depth113.505×
Illumina Median Q Score38
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads3,213,830
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness99.59%
PassedEstimated genome contamination0.09%
PassedAverage depth of coverage113.505×
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