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- Treponema socranskii
- Treponema socranskii subsp. paredis
Treponema socranskii subsp. paredis (ATCC® 35535™)
Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | April 29, 2024 |
| Length | 2,737,362 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 2 (0 Circularized) |
| Assembly Level | Chromosome |
| N50 | 2,569,502 nt |
| %GC | 48.29% |
| Organism Summary | |
|---|---|
| Name | ATCC® 35535™ |
| Isolation | Supragingival plaque from patient with periodontitis |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Annotations Summary | |
|---|---|
| Number of CDS | 2,398 |
| Number of Hypothetical Proteins | 496 |
| Number of tRNA | 49 |
| Number of 5s rRNA | 3 |
| Number of 16s rRNA | 3 |
| Number of 23s rRNA | 3 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 297,282 |
| Oxford Nanopore Median Q Score | 36 |
| Illumina Read Count | 12,136,520 |
| Illumina Mean Coverage Depth | 658.242× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads12,136,520
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness99.98%
PassedEstimated genome contamination0%
PassedAverage depth of coverage658.242×
Notes
This bacterium was assembled, annotated, and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions
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