ATCC logoHOMEGENOMESSEQUENCE SEARCH
DOCUMENTATION
  • Campylobacter
  • Campylobacter jejuni

Campylobacter jejuni (ATCC® 49943™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Level
Date PublishedSeptember 3, 2019
Length1,617,945 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs1 (All Circularized)
Assembly SummaryComplete
N501,617,945 nt
%GC30.56%
Organism Summary
NameATCC® 49943™
Biosafety Level2
Type StrainNo
Annotations Summary
Number of CDS1,618
Number of Hypothetical Proteins609
Number of tRNA44
Number of 5s rRNA0
Number of 16s rRNA3
Number of 23s rRNA3
Input Reads Summary
Oxford Nanopore Read Count113,100
Oxford Nanopore Median Q Score25
Illumina Read Count3,024,953
Illumina Mean Coverage Depth407.349×
Illumina Median Q Score38
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads3,024,953
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness99.85%
PassedEstimated genome contamination0.15%
PassedAverage depth of coverage407.349×
Powered byOne Codex
Enhanced Authentication InitiativeData Use AgreementNeed Help? Contact us at ATCC Support
This website uses cookies to ensure you get the best experience on our website. Learn moreDecline