Organism Summary | |
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Catalog Number | ATCC® 9912™ |
Strain Alias | 41-173 [D.W. Dye ES1, ICMP 1577, ICPB ENI, NCPPB 2045] |
Tags | Type Strain |
Biosafety Level | 1 |
Type Strain | Yes |
Assembly Summary | |
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Date Published | September 3, 2019 |
Length | 4,729,243 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 2 (All Circularized) |
N50 | 4,602,536 nt |
%GC | 54.83% |
Annotations Summary | |
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Number of CDS | 4372 |
Number of Hypothetical Proteins | 183 |
Number of tRNA | 84 |
Number of 5s rRNA | 9 |
Number of 16s rRNA | 8 |
Number of 23s rRNA | 8 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 81,792 |
Oxford Nanopore Median Q Score | 24 |
Illumina Read Count | 3,109,460 |
Illumina Mean Coverage Depth | 133.91× |
Illumina Median Q Score | 38 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 3,109,460 |
Median Q score, all bases | 38 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
---|---|
Estimated genome completeness | 99.4% |
Estimated genome contamination | 0.67% |
Average depth of coverage | 133.91× |