Organism Summary | |
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Catalog Number | ATCC® 51681™ |
Strain Alias | AB125 |
Isolation | Sputum from patient with cystic fibrosis |
Tags | Methylation Data |
Biosafety Level | 2 |
Type Strain | No |
Assembly Summary | |
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Date Published | April 29, 2024 |
Length | 6,929,921 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 3 (0 Circularized) |
N50 | 2,860,307 nt |
%GC | 66.06% |
Annotations Summary | |
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Number of CDS | 6377 |
Number of Hypothetical Proteins | 553 |
Number of tRNA | 65 |
Number of 5s rRNA | 4 |
Number of 16s rRNA | 4 |
Number of 23s rRNA | 4 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 138,767 |
Oxford Nanopore Median Q Score | 23 |
Illumina Read Count | 8,991,860 |
Illumina Mean Coverage Depth | 191.728× |
Illumina Median Q Score | 34 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 8,991,860 |
Median Q score, all bases | 34 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
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Estimated genome completeness | 99.68% |
Estimated genome contamination | 0.11% |
Average depth of coverage | 191.728× |
This bacterium was assembled, annotated, and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions