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Overview
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Quality Control
| Assembly Summary | |
|---|---|
| Date Published | April 2, 2021 |
| Length | 2,150,911 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 3 (All Circularized) |
| N50 | 2,141,026 nt |
| %GC | 39.34% |
| Organism Summary | |
|---|---|
| Name | ATCC® 43078™ |
| Strain Name | NCDO 2023 [0134, CCUG 27301, CIP 102914, DSM 20662, LMG 15885, LMG 16023, NCFB 2023] |
| Isolation | Cow |
| Tags | Type Strain |
| Biosafety Level | 2 |
| Type Strain | |
| Antigenic Properties | Lancefield's group C |
| Annotations Summary | |
|---|---|
| Number of CDS | 2071 |
| Number of Hypothetical Proteins | 190 |
| Number of tRNA | 67 |
| Number of 5s rRNA | 6 |
| Number of 16s rRNA | 6 |
| Number of 23s rRNA | 6 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 19,161 |
| Oxford Nanopore Median Q Score | 26 |
| Illumina Read Count | 17,120,223 |
| Illumina Mean Coverage Depth | 1,112.931× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads17,120,223
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 251%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness99.81%
PassedEstimated genome contamination0%
PassedAverage depth of coverage1,112.931×
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