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Overview
Genome Browser
Related Genomes
Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 43078™ |
| Strain Alias | NCDO 2023 [0134, CCUG 27301, CIP 102914, DSM 20662, LMG 15885, LMG 16023, NCFB 2023] |
| Isolation | Cow |
| Tags | Type Strain |
| Biosafety Level | 2 |
| Type Strain | Yes |
| Antigenic Properties | Lancefield's group C |
| Assembly Summary | |
|---|---|
| Date Published | April 2, 2021 |
| Length | 2,150,911 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 3 (All Circularized) |
| N50 | 2,141,026 nt |
| %GC | 39.34% |
| Annotations Summary | |
|---|---|
| Number of CDS | 2071 |
| Number of Hypothetical Proteins | 190 |
| Number of tRNA | 67 |
| Number of 5s rRNA | 6 |
| Number of 16s rRNA | 6 |
| Number of 23s rRNA | 6 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 19,161 |
| Oxford Nanopore Median Q Score | 26 |
| Illumina Read Count | 17,120,223 |
| Illumina Mean Coverage Depth | 1,112.931× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 17,120,223 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 99.81% |
| Estimated genome contamination | 0% |
| Illumina depth of coverage | 1,112.931× |
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