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Overview
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Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 11635™ |
| Strain Alias | M5-12259 [Boots 903, CBS 727.72, ETH 14307, ETH 28344, ETH 28360, ETH 28391, HUT 6087, IAM 0045, IFO 13426, IMRU 3737, ISP 5517, MA-1625, NCIB 8594, NRRL 2338, RIA 1387] |
| Isolation | Soil |
| Tags | Methylation DataType Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | February 26, 2020 |
| Length | 8,270,960 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 22 (2 Circularized) |
| N50 | 836,604 nt |
| %GC | 71.14% |
| Annotations Summary | |
|---|---|
| Number of CDS | 7332 |
| Number of Hypothetical Proteins | 935 |
| Number of tRNA | 50 |
| Number of 5s rRNA | 4 |
| Number of 16s rRNA | 4 |
| Number of 23s rRNA | 4 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 657,195 |
| Oxford Nanopore Median Q Score | 22 |
| Illumina Read Count | 13,651,241 |
| Illumina Mean Coverage Depth | 220.785× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 13,651,241 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 100% |
| Estimated genome contamination | 0% |
| Illumina depth of coverage | 220.785× |
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