ATCC logoHOMEGENOMESSEQUENCE SEARCH
DOCUMENTATION
  • Caulobacter
  • Caulobacter vibrioides

Caulobacter vibrioides (ATCC® 19089™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Summary
Date PublishedMay 14, 2019
Length4,136,851 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs1 (All Circularized)
Assembly LevelComplete
N504,136,851 nt
%GC67.16%
Organism Summary
NameATCC® 19089™
IsolationPond water
Biosafety Level1
Type StrainNo
Annotations Summary
Number of CDS3,804
Number of Hypothetical Proteins1,840
Number of tRNA61
Number of 5s rRNA2
Number of 16s rRNA2
Number of 23s rRNA2
Input Reads Summary
Oxford Nanopore Read Count58,112
Oxford Nanopore Median Q Score15
Illumina Read Count5,655,168
Illumina Mean Coverage Depth274.753×
Illumina Median Q Score38
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads5,655,168
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness99.68%
PassedEstimated genome contamination0%
PassedAverage depth of coverage274.753×
Powered byOne Codex
Enhanced Authentication InitiativeData Use AgreementNeed Help? Contact us at ATCC Support
This website uses cookies to ensure you get the best experience on our website. Learn moreDecline