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  • Vibrio alginolyticus

Vibrio alginolyticus (ATCC® 33787™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Summary
Date PublishedJuly 1, 2021
Length5,724,999 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs5 (All Circularized)
Assembly LevelComplete
N503,362,690 nt
%GC44.51%
Organism Summary
NameATCC® 33787™
IsolationSeawater
Biosafety Level1
Type StrainNo
Annotations Summary
Number of CDS5,183
Number of Hypothetical Proteins2,406
Number of tRNA124
Number of 5s rRNA12
Number of 16s rRNA11
Number of 23s rRNA11
Input Reads Summary
Oxford Nanopore Read Count103,146
Oxford Nanopore Median Q Score27
Illumina Read Count20,643,631
Illumina Mean Coverage Depth506.446×
Illumina Median Q Score34
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads20,643,631
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness99.95%
PassedEstimated genome contamination0.65%
PassedAverage depth of coverage506.446×
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