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Overview
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Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® BAA-605™ |
| Strain Alias | DSM 13855 [CECT 5946, M31] |
| Isolation | Salt marsh, saltern crystallizer pond; isolated September 1999 |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | June 19, 2019 |
| Length | 3,586,926 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 2 (All Circularized) |
| N50 | 3,551,421 nt |
| %GC | 66.13% |
| Annotations Summary | |
|---|---|
| Number of CDS | 3018 |
| Number of Hypothetical Proteins | 540 |
| Number of tRNA | 44 |
| Number of 5s rRNA | 1 |
| Number of 16s rRNA | 1 |
| Number of 23s rRNA | 1 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 48,069 |
| Oxford Nanopore Median Q Score | 16 |
| Illumina Read Count | 4,581,972 |
| Illumina Mean Coverage Depth | 255.463× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 4,581,972 |
| Median Q score, all bases | 38 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 96.51% |
| Estimated genome contamination | 1.16% |
| Illumina depth of coverage | 255.463× |
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