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Overview
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Quality Control
| Assembly Summary | |
|---|---|
| Date Published | November 26, 2024 |
| Length | 8,049,736 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 9 (1 Circularized) |
| Assembly Level | Chromosome |
| N50 | 4,369,534 nt |
| %GC | 68.16% |
| Organism Summary | |
|---|---|
| Name | ATCC® 43993™ |
| Isolation | Spleen of yellowtail, Seriola quinqueradiata |
| Tags | Type Strain |
| Biosafety Level | 2 |
| Type Strain | Yes |
| Annotations Summary | |
|---|---|
| Number of CDS | 7,545 |
| Number of Hypothetical Proteins | 1,456 |
| Number of tRNA | 61 |
| Number of 5s rRNA | 4 |
| Number of 16s rRNA | 4 |
| Number of 23s rRNA | 4 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 68,749 |
| Oxford Nanopore Median Q Score | 34 |
| Illumina Read Count | 5,572,622 |
| Illumina Mean Coverage Depth | 102.433× |
| Illumina Median Q Score | 40 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads5,572,622
PassedMedian Q score, all bases40
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness99.81%
PassedEstimated genome contamination2.81%
PassedAverage depth of coverage102.433×
Notes
This bacterium was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions
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