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Overview
Genome Browser
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Quality Control
Organism Summary | |
|---|---|
| Catalog Number | ATCC® BAA-1611D-5™ |
| Isolation | Source culture ATCC BAA-1611 is not available for distribution.The presence of pMT1 and the absence of pCD1 and pPCP1 in BAA-1611D-5 have been confirmed by PCR amplification of plasmid-specific sequences from extracted DNA. |
| Tags | Methylation Data |
| Biosafety Level | 1 |
| Type Strain | No |
Assembly Summary | |
|---|---|
| Date Published | December 15, 2021 |
| Length | 4,605,651 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 2 (All Circularized) |
| N50 | 4,504,661 nt |
| %GC | 47.65% |
Annotations Summary | |
|---|---|
| Number of CDS | 4079 |
| Number of Hypothetical Proteins | 281 |
| Number of tRNA | 72 |
| Number of 5s rRNA | 8 |
| Number of 16s rRNA | 7 |
| Number of 23s rRNA | 7 |
Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 198,687 |
| Oxford Nanopore Median Q Score | 24 |
| Illumina Read Count | 21,329,017 |
| Illumina Mean Coverage Depth | 654.278× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length |
|---|
Displaying Genome
Sequencing Quality Control
Sequencing Quality Control Metrics | |
|---|---|
| Number of trimmed reads | 21,329,017 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
Assembly Quality Control
Assembly Quality Control Metrics | |
|---|---|
| Estimated genome completeness | 98.84% |
| Estimated genome contamination | 0.81% |
| Illumina depth of coverage | 654.278× |
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