ATCC® TSD-445™ | Corynebacterium drakensteinensis

Overview

Genome Browser

Related Genomes

Quality Control

Assembly Summary
Date Published	March 24, 2025
Length	2,506,654 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	1 (All Circularized)
N50	2,506,654 nt
%GC	56.84%

Organism Summary
Name	ATCC® TSD-445™
Isolation	Nasopharyngeal swab of a 30 week old child.
Tags	Type Strain
Biosafety Level	1
Type Strain

Annotations Summary
Number of CDS	2202
Number of Hypothetical Proteins	317
Number of tRNA	46
Number of 5s rRNA	3
Number of 16s rRNA	3
Number of 23s rRNA	3

Input Reads Summary
Oxford Nanopore Read Count	111,157
Oxford Nanopore Median Q Score	35
Illumina Read Count	4,579,556
Illumina Mean Coverage Depth	515.533×
Illumina Median Q Score	40

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

4 out of 4 passed

PassedNumber of trimmed reads4,579,556

PassedMedian Q score, all bases40

PassedPercent of median Q scores per cycle greater than 25100%

PassedAmbiguous content (% N bases)0.06%

Assembly Quality Control

Metrics assessing the assembly quality

3 out of 3 passed

PassedEstimated genome completeness99.7%

PassedEstimated genome contamination0%

PassedAverage depth of coverage515.533×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions

Corynebacterium drakensteinensis (ATCC® TSD-445™)