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Overview
Related Genomes
Quality Control
Organism Summary | |
|---|---|
| Catalog Number | ATCC® VR-1433™ |
| Strain Alias | AV92-3:L (low passage) |
| Isolation | Patient with zoster. |
| Biosafety Level | 2 |
Assembly Summary | |
|---|---|
| Date Published | June 1, 2023 |
| Length | 117,647 nt |
| Sequencing Technology | Illumina |
| Number of Contigs | 4 (0 Circularized) |
| Assembly Level | Complete |
| N50 | 63,698 nt |
| %GC | 45.19% |
Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 0 |
| Oxford Nanopore Median Q Score | 0 |
| Illumina Read Count | 2,876,651 |
| Illumina Mean Coverage Depth | 162.657× |
| Illumina Median Q Score | 39 |
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
All Genomes
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length |
|---|
Displaying Genome
Sequencing Quality Control
Sequencing Quality Control Metrics | |
|---|---|
| Median Q score, all bases | 39 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
Notes
This virus was manually assembled and curated, due to its automated assembly not meeting our reference-based quality filtering. See our technical documentation for further details: http://docs.onecodex.com/en/articles/3996287-genome-assembly
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