ATCC® 700626™ | Virgibacillus marismortui

Overview

Genome Browser

Related Genomes

Quality Control

Organism Summary
Catalog Number	ATCC® 700626™
Strain Alias	123 [CECT 5066, CIP 105609, DSM 12325]
Isolation	Surface level water from northern basin of Dead Sea near mouth of Jordan River
Tags	Methylation DataType Strain
Biosafety Level	1
Type Strain	Yes

Assembly Summary
Date Published	November 30, 2023
Length	4,667,069 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	6 (2 Circularized)
N50	2,388,255 nt
%GC	36.8%

Annotations Summary
Number of CDS	4609
Number of Hypothetical Proteins	766
Number of tRNA	65
Number of 5s rRNA	5
Number of 16s rRNA	4
Number of 23s rRNA	4

Input Reads Summary
Oxford Nanopore Read Count	111,564
Oxford Nanopore Median Q Score	26
Illumina Read Count	10,916,786
Illumina Mean Coverage Depth	344.812×
Illumina Median Q Score	34

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Genomes

	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	10,916,786
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	99.33%
Estimated genome contamination	0.78%
Illumina depth of coverage	344.812×
ONT depth of coverage	150.062×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions