ATCC® 2601™ | Saccharomyces kudriavzevii

Overview

Annotations

Related Genomes

Quality Control

Organism Summary
Catalog Number	ATCC® 2601™
Strain Alias	[2601-U]
Biosafety Level	1
Type Strain	No

Assembly Summary
Date Published	December 15, 2021
Length	22,959,926 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	37 (0 Circularized)
N50	913,476 nt
%GC	39.07%

Annotations Summary
Number of BUSCO Annotations	736

Input Reads Summary
Oxford Nanopore Read Count	508,049
Oxford Nanopore Median Q Score	24
Illumina Read Count	16,133,968
Illumina Mean Coverage Depth	91.826×
Illumina Median Q Score	34

Most similar genomes

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Genomes

	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	16,133,968
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

BUSCO Quality Control
Estimated genome completeness	91.56%
Average depth of coverage	91.826×

Notes

The strain was originally classified as Saccharomyces cerevisiae based on traditional taxonomic characterizations, but a multigene sequence analysis identified it as Saccharomyces kudriavzevii a close relative of Saccharomyces cerevisiae [1]. Recent next-generation sequencing has shown that this strain could be a hybrid of Saccharomyces kudriavzevii and Saccharomyces cerevisiae. This taxonomic update to the strain will not affect its application in antifungal drug testing assays and many other usages. [1] Suh SO, et al. Update of USP drug testing reference strain ATCC® 2601™. Pharma. Microbiol. Forum Newslett. 19: 4-11, 2013.

Saccharomyces kudriavzevii (ATCC® 2601™)