ATCC® BAA-3402™ | Salmonella enterica subsp. enterica serovar Heidelberg

Overview

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Quality Control

Organism Summary
Catalog Number	ATCC® BAA-3402™
Type Strain	No

Assembly Summary
Date Published	September 16, 2025
Length	4,952,912 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	4 (All Circularized)
N50	4,794,869 nt
%GC	52.09%

Annotations Summary
Number of CDS	4744
Number of Hypothetical Proteins	220
Number of tRNA	85
Number of 5s rRNA	8
Number of 16s rRNA	7
Number of 23s rRNA	7

Input Reads Summary
Oxford Nanopore Read Count	36,184
Oxford Nanopore Median Q Score	42
Illumina Read Count	10,769,660
Illumina Mean Coverage Depth	319.132×
Illumina Median Q Score	40

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

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		Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length

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Sequencing Quality Control

Sequencing Quality Control Metrics
Number of trimmed reads	10,769,660
Median Q score, all bases	40
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control Metrics
Estimated genome completeness	99.32%
Estimated genome contamination	0.44%
Illumina depth of coverage	319.132×
ONT depth of coverage	24.985×

This bacterium was assembled, annotated, and curated using Oatmeal v3.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions