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  • Thermanaerovibrio
  • Thermanaerovibrio acidaminovorans

Thermanaerovibrio acidaminovorans (ATCC® 49978™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Summary
Date PublishedFebruary 26, 2020
Length1,852,980 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs1 (0 Circularized)
Assembly LevelChromosome
N501,852,980 nt
%GC63.78%
Organism Summary
NameATCC® 49978™
IsolationUpflow anaerobic sludge bed reactor of a sugar refinery
TagsType Strain
Biosafety Level1
Type StrainYes
Annotations Summary
Number of CDS1,818
Number of Hypothetical Proteins674
Number of tRNA52
Number of 5s rRNA3
Number of 16s rRNA3
Number of 23s rRNA3
Input Reads Summary
Oxford Nanopore Read Count264,125
Oxford Nanopore Median Q Score21
Illumina Read Count1,377,705
Illumina Mean Coverage Depth106.225×
Illumina Median Q Score38
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads1,377,705
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness98.31%
PassedEstimated genome contamination0%
PassedAverage depth of coverage106.225×
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