Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | February 26, 2020 |
| Length | 1,852,980 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 1 (0 Circularized) |
| Assembly Level | Chromosome |
| N50 | 1,852,980 nt |
| %GC | 63.78% |
| Organism Summary | |
|---|---|
| Name | ATCC® 49978™ |
| Isolation | Upflow anaerobic sludge bed reactor of a sugar refinery |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Annotations Summary | |
|---|---|
| Number of CDS | 1,818 |
| Number of Hypothetical Proteins | 674 |
| Number of tRNA | 52 |
| Number of 5s rRNA | 3 |
| Number of 16s rRNA | 3 |
| Number of 23s rRNA | 3 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 264,125 |
| Oxford Nanopore Median Q Score | 21 |
| Illumina Read Count | 1,377,705 |
| Illumina Mean Coverage Depth | 106.225× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | Uniprot ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads1,377,705
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality (from CheckM).
3 out of 3 passed
PassedEstimated genome completeness98.31%
PassedEstimated genome contamination0%
PassedAverage depth of coverage106.225×
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