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Overview
Genome Browser
Related Genomes
Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 15829™ |
| Strain Alias | Rp-3 [CIP 104324, IAM 1561] |
| Isolation | Paddy |
| Tags | Methylation DataType Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | September 29, 2020 |
| Length | 3,605,986 nt |
| Sequencing Technology | Illumina + Oxford Nanopore |
| Number of Contigs | 1 (All Circularized) |
| N50 | 3,605,986 nt |
| %GC | 69.69% |
| Annotations Summary | |
|---|---|
| Number of CDS | 3349 |
| Number of Hypothetical Proteins | 474 |
| Number of tRNA | 48 |
| Number of 5s rRNA | 3 |
| Number of 16s rRNA | 3 |
| Number of 23s rRNA | 3 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 338,136 |
| Oxford Nanopore Median Q Score | 23 |
| Illumina Read Count | 4,453,635 |
| Illumina Mean Coverage Depth | 195.089× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 4,453,635 |
| Median Q score, all bases | 38 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 98.99% |
| Estimated genome contamination | 0.25% |
| Average depth of coverage | 195.089× |
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