ATCC® VR-1470™ | Waddlia chondrophila

Overview

Genome Browser

Related Genomes

Quality Control

Assembly Summary
Date Published	June 11, 2025
Length	2,162,312 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	10 (9 Circularized)
N50	2,117,495 nt
%GC	43.88%

Organism Summary
Name	ATCC® VR-1470™
Isolation	Pooled liver/lung homogenate from the aborted fetus of a 19-month-old primigravid Holstein cow during month 3 of gestation.
Tags	Type Strain
Biosafety Level	2
Type Strain

Annotations Summary
Number of CDS	1893
Number of Hypothetical Proteins	481
Number of tRNA	37
Number of 5s rRNA	4
Number of 16s rRNA	2
Number of 23s rRNA	2

Input Reads Summary
Oxford Nanopore Read Count	45,845
Oxford Nanopore Median Q Score	41
Illumina Read Count	7,136,162
Illumina Mean Coverage Depth	272.246×
Illumina Median Q Score	40

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

4 out of 4 passed

PassedNumber of trimmed reads7,136,162

PassedMedian Q score, all bases40

PassedPercent of median Q scores per cycle greater than 25100%

PassedAmbiguous content (% N bases)0.07%

Assembly Quality Control

Metrics assessing the assembly quality

3 out of 3 passed

PassedEstimated genome completeness95.07%

PassedEstimated genome contamination2.7%

PassedAverage depth of coverage272.246×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v3.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions

Waddlia chondrophila (ATCC® VR-1470™)