ATCC® VR-1470™ | Waddlia chondrophila

Overview

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Quality Control

Organism Summary
Catalog Number	ATCC® VR-1470™
Strain Alias	WSU 86-1044
Isolation	Pooled liver/lung homogenate from the aborted fetus of a 19-month-old primigravid Holstein cow during month 3 of gestation.
Tags	Type Strain
Biosafety Level	2
Type Strain	Yes

Assembly Summary
Date Published	June 11, 2025
Length	2,162,312 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	10 (9 Circularized)
N50	2,117,495 nt
%GC	43.88%

Annotations Summary
Number of CDS	1899
Number of Hypothetical Proteins	482
Number of tRNA	37
Number of 5s rRNA	4
Number of 16s rRNA	2
Number of 23s rRNA	2

Input Reads Summary
Oxford Nanopore Read Count	45,845
Oxford Nanopore Median Q Score	41
Illumina Read Count	7,136,162
Illumina Mean Coverage Depth	272.246×
Illumina Median Q Score	40

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

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	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

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Sequencing Quality Control
Number of trimmed reads	7,136,162
Median Q score, all bases	40
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	95.07%
Estimated genome contamination	2.7%
Illumina depth of coverage	272.246×
ONT depth of coverage	135.84×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v3.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions