ATCC® 49770™ | Mycobacterium asiaticum

Overview

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Quality Control

Assembly Summary
Date Published	November 30, 2023
Length	6,023,184 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	4 (0 Circularized)
N50	5,971,525 nt
%GC	66.77%

Annotations Summary
Number of CDS	5509
Number of Hypothetical Proteins	585
Number of tRNA	47
Number of 5s rRNA	1
Number of 16s rRNA	1
Number of 23s rRNA	1

Input Reads Summary
Oxford Nanopore Read Count	92,039
Oxford Nanopore Median Q Score	23
Illumina Read Count	10,477,790
Illumina Mean Coverage Depth	257.013×
Illumina Median Q Score	34

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Genomes

	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	10,477,790
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	99.94%
Estimated genome contamination	0.33%
Illumina depth of coverage	257.013×
ONT depth of coverage	95.619×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions