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Overview
Genome Browser
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Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 19795™ |
| Strain Alias | ISP 5040 [CBS 547.68, IFO 12806, IMET 7653, M-43-05865, NRRL 2450, RIA 1074] |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | December 23, 2021 |
| Length | 9,114,969 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 15 (0 Circularized) |
| N50 | 960,455 nt |
| %GC | 68.96% |
| Annotations Summary | |
|---|---|
| Number of CDS | 8262 |
| Number of Hypothetical Proteins | 1211 |
| Number of tRNA | 55 |
| Number of 5s rRNA | 4 |
| Number of 16s rRNA | 4 |
| Number of 23s rRNA | 4 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 222,997 |
| Oxford Nanopore Median Q Score | 24 |
| Illumina Read Count | 11,043,665 |
| Illumina Mean Coverage Depth | 161.598× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 11,043,665 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 99% |
| Estimated genome contamination | 1.01% |
| Illumina depth of coverage | 161.598× |
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