Purchased a strain from ATCC? Enter in the lot number to download the genome or learn more about our supporting memberships here.
- Mycobacterium simiae complex
- Mycobacterium kubicae
Mycobacterium kubicae (ATCC® 700732™)
Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | October 3, 2023 |
| Length | 5,943,030 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 17 (2 Circularized) |
| N50 | 1,219,567 nt |
| %GC | 66.02% |
| Organism Summary | |
|---|---|
| Name | ATCC® 700732™ |
| Isolation | Sputum; Dept. of Health and Environmental Control |
| Tags | Type Strain |
| Biosafety Level | 2 |
| Type Strain | |
| Annotations Summary | |
|---|---|
| Number of CDS | 5579 |
| Number of Hypothetical Proteins | 689 |
| Number of tRNA | 46 |
| Number of 5s rRNA | 1 |
| Number of 16s rRNA | 1 |
| Number of 23s rRNA | 1 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 51,438 |
| Oxford Nanopore Median Q Score | 13.5 |
| Illumina Read Count | 10,481,192 |
| Illumina Mean Coverage Depth | 259.145× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads10,481,192
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0.03%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness99.61%
PassedEstimated genome contamination0.67%
PassedAverage depth of coverage259.145×
Notes
This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions
This website uses cookies to ensure you get the best experience on our website. Learn moreDecline