Organism Summary | |
---|---|
Catalog Number | ATCC® 28752™ |
Strain Alias | H-1B (AUA 532) [NRRL 5927] |
Isolation | Ground corn |
Biosafety Level | 1 |
Type Strain | No |
Assembly Summary | |
---|---|
Date Published | June 3, 2024 |
Length | 32,922,409 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 57 (0 Circularized) |
N50 | 1,408,352 nt |
%GC | 46.4% |
Annotations Summary | |
---|---|
Number of BUSCO Annotations | 751 |
Input Reads Summary | |
---|---|
Oxford Nanopore Read Count | 47,434 |
Oxford Nanopore Median Q Score | 25 |
Illumina Read Count | 86,079,174 |
Illumina Mean Coverage Depth | 368.095× |
Illumina Median Q Score | 34 |
Contig | Start | End | Protein Product | Type | OrthoDB Group |
---|
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
---|
Sequencing Quality Control | |
---|---|
Number of trimmed reads | 86,079,174 |
Median Q score, all bases | 34 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
BUSCO Quality Control | |
---|---|
Estimated genome completeness | 99.1% |
Average depth of coverage | 368.095× |
This fungus was assembled, annotated, and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions