ATCC® 49895™ | Mycoplasmoides genitalium

Overview

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Quality Control

Assembly Summary
Date Published	June 3, 2024
Length	579,956 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	1 (All Circularized)
N50	579,956 nt
%GC	31.69%

Annotations Summary
Number of CDS	526
Number of Hypothetical Proteins	32
Number of tRNA	36
Number of 5s rRNA	1
Number of 16s rRNA	1
Number of 23s rRNA	1

Input Reads Summary
Oxford Nanopore Read Count	51,596
Oxford Nanopore Median Q Score	30
Illumina Read Count	5,265,378
Illumina Mean Coverage Depth	1,344.949×
Illumina Median Q Score	34

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Genomes

	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	5,265,378
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	99.25%
Estimated genome contamination	0%
Illumina depth of coverage	1,344.949×
ONT depth of coverage	660.088×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions