Organism Summary | |
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Catalog Number | ATCC® 51198™ |
Strain Alias | NCIMB 13204 [VKM B-1734; 4] |
Isolation | Sulfate saline soil |
Tags | Methylation DataType Strain |
Biosafety Level | 1 |
Type Strain | Yes |
Assembly Summary | |
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Date Published | April 5, 2023 |
Length | 5,440,909 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 7 (6 Circularized) |
N50 | 3,889,165 nt |
%GC | 64.26% |
Annotations Summary | |
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Number of CDS | 5226 |
Number of Hypothetical Proteins | 1226 |
Number of tRNA | 50 |
Number of 5s rRNA | 4 |
Number of 16s rRNA | 3 |
Number of 23s rRNA | 3 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 7,971 |
Oxford Nanopore Median Q Score | 24 |
Illumina Read Count | 10,718,869 |
Illumina Mean Coverage Depth | 218.986× |
Illumina Median Q Score | 34 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 10,718,869 |
Median Q score, all bases | 34 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
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Estimated genome completeness | 99.49% |
Estimated genome contamination | 0.95% |
Average depth of coverage | 218.986× |