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- Salmonella enterica subsp. enterica
- Salmonella enterica subsp. enterica serovar Typhimurium
Salmonella enterica subsp. enterica serovar Typhimurium (ATCC® 13311™)
Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | March 27, 2020 |
| Length | 4,860,935 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 3 (2 Circularized) |
| Assembly Level | Chromosome |
| N50 | 4,793,227 nt |
| %GC | 52.13% |
| Organism Summary | |
|---|---|
| Name | ATCC® 13311™ |
| Isolation | Feces; food poisoning |
| Biosafety Level | 2 |
| Type Strain | No |
| Annotations Summary | |
|---|---|
| Number of CDS | 4,602 |
| Number of Hypothetical Proteins | 223 |
| Number of tRNA | 85 |
| Number of 5s rRNA | 8 |
| Number of 16s rRNA | 7 |
| Number of 23s rRNA | 7 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 132,549 |
| Oxford Nanopore Median Q Score | 16 |
| Illumina Read Count | 5,220,610 |
| Illumina Mean Coverage Depth | 214.016× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads5,220,610
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness100%
PassedEstimated genome contamination0.07%
PassedAverage depth of coverage214.016×
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