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  • Salmonella enterica
  • Salmonella enterica subsp. enterica

Salmonella enterica subsp. enterica (ATCC® 13311™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Level
Date PublishedMarch 27, 2020
Length4,860,935 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs3 (2 Circularized)
Assembly SummaryChromosome
N504,793,227 nt
%GC52.13%
Organism Summary
NameATCC® 13311™
Annotations Summary
Number of CDS4,523
Number of Hypothetical Proteins1,184
Number of tRNA85
Number of 5s rRNA8
Number of 16s rRNA7
Number of 23s rRNA7
Input Reads Summary
Oxford Nanopore Read Count132,549
Oxford Nanopore Median Q Score16
Illumina Read Count5,220,610
Illumina Mean Coverage Depth214.016×
Illumina Median Q Score38
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads5,220,610
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness100%
PassedEstimated genome contamination0.07%
PassedAverage depth of coverage214.016×
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