ATCC® 27893™ | Nostoc sp. | ATCC Genome Portal

Overview

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Quality Control

Assembly Summary
Date Published	December 21, 2020
Length	7,206,932 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	7 (All Circularized)
Assembly Level	Complete
N50	6,411,227 nt
%GC	41.27%

Organism Summary
Name	ATCC® 27893™
Isolation	Derived from existing strain
Biosafety Level	1
Type Strain	No

Annotations Summary
Number of CDS	6,050
Number of Hypothetical Proteins	1,238
Number of tRNA	70
Number of 5s rRNA	4
Number of 16s rRNA	4
Number of 23s rRNA	4

Input Reads Summary
Oxford Nanopore Read Count	42,056
Oxford Nanopore Median Q Score	23
Illumina Read Count	12,429,186
Illumina Mean Coverage Depth	241.346×
Illumina Median Q Score	34

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

4 out of 4 passed

PassedNumber of trimmed reads12,429,186

PassedMedian Q score, all bases34

PassedPercent of median Q scores per cycle greater than 25100%

PassedAmbiguous content (% N bases)0%

Metrics assessing the assembly quality

3 out of 3 passed

PassedEstimated genome completeness99.19%

PassedEstimated genome contamination0%

PassedAverage depth of coverage241.346×